I'll need to do a little bit of thinking about how to handle the EFF coins safely (just dumping them all into the Faucet's wallet is not a good idea; I would hate for them to get lost if somebody managed to hack the Faucet's web-facing code). Whatever I do, I will make sure the process of moving the coins from the EFF's donation address to the Faucet is absolutely transparent.
I would contact Gavin. He runs the Faucet. 
Gavin, I'd be all for the Developers getting all of them and/or send them to an address that
Gavin you specify after you state you'll move them into the Faucet a few at a time. That way no chance of the Faucet being abused, we see you're already making it harder and harder to double-dip at the Faucet.
The Faucet is the single biggest tool to get the general public into Bitcoins. Users can get a millicoin and then send a microcoin back to the Faucet to see how the whole thing works.
There's nothing more depressing than seeing a 0 balance in your client and wondering whether it's worth exploring.