Based on your config file info, you seem to be running that binary on an RPi? The KnC devices come with a beaglebone built in, so what is this combination? Have you built a custom one plugging the GPIO pins of an RPi to the KnC hardware? There's an awful lot more to running those devices than just cgminer, if I'm not mistaken. The firmware does a lot more than just run cgminer on a beaglebone.
Sorry, I should have given more details, it is on a begelbone black running Arch;-
uname -a
Linux minepeon 3.12.1-1-ARCH #1 SMP Wed Nov 20 20:27:04 MST 2013 armv7l GNU/Linux
I have enabled the spi's and i2c, I am also looking through their firmware to see what needs to be done, I was just wondering if you had a sort of 'cheat sheat' to get them going.
Neil